Variant report

Variant	rs4473022
Chromosome Location	chr12:26042291-26042292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10771245	0.83[AMR][1000 genomes]
rs1488826	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs1488827	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs4246237	0.85[AMR][1000 genomes]
rs7298011	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26037200-26042400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26038000-26042400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:26038200-26042600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:26038400-26043000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:26039000-26043600	Weak transcription	HMEC	breast
6	chr12:26039200-26043600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:26039200-26044400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:26040600-26042400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr12:26040800-26042600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:26042200-26043400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:26042200-26043400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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