Variant report

Variant	rs4473877
Chromosome Location	chr6:144780581-144780582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144778116..144781103-chr6:144785812..144788020,2	MCF-7	breast:
2	chr6:144778831..144780894-chr6:144783346..144785550,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10081013	0.85[CEU][hapmap]
rs10457766	0.85[CEU][hapmap]
rs9497011	0.85[CEU][hapmap]
rs9497021	0.85[CEU][hapmap]
rs9497022	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
6	chr6:144762800-144788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144762800-144790800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144762800-144791400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:144763000-144790800	Strong transcription	Primary B cells from cord blood	blood
10	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:144763200-144781800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:144763200-144783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:144763200-144790800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:144763200-144793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:144764000-144781400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:144764000-144790200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:144764200-144784200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:144764200-144788000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:144764200-144788200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:144764400-144838800	Weak transcription	A549	lung
21	chr6:144765200-144781400	Strong transcription	HepG2	liver
22	chr6:144769000-144787800	Weak transcription	NHEK	skin
23	chr6:144771200-144781400	Weak transcription	Fetal Heart	heart
24	chr6:144771400-144815800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:144771800-144780800	Weak transcription	Pancreas	Pancrea
26	chr6:144771800-144781400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:144771800-144811800	Weak transcription	Stomach Mucosa	stomach
28	chr6:144772000-144788200	Weak transcription	Ovary	ovary
29	chr6:144773200-144780800	Weak transcription	Fetal Lung	lung
30	chr6:144773400-144780600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:144774600-144781400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:144774600-144790800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:144778400-144780800	Strong transcription	Primary T cells from cord blood	blood
34	chr6:144778400-144786400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:144778400-144788400	Strong transcription	HUVEC	blood vessel
36	chr6:144778600-144781400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:144778600-144783600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:144778600-144786200	Strong transcription	Liver	Liver
39	chr6:144778600-144786800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:144778600-144813800	Weak transcription	Hela-S3	cervix
41	chr6:144778800-144785000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:144779200-144780800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:144779200-144781000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:144779200-144786400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:144779200-144790800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:144779400-144780800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:144779400-144781000	Strong transcription	Right Ventricle	heart
48	chr6:144779400-144782800	Strong transcription	NH-A	brain
49	chr6:144779400-144783000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:144779400-144783600	Strong transcription	Stomach Smooth Muscle	stomach

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