Variant report

Variant	rs4476431
Chromosome Location	chr21:46114003-46114004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr21:46113903-46114144	MCF10A-Er-Src	breast:	n/a	n/a
2	SETDB1	chr21:46113528-46114223	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
KRTAP10-12	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11088959	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1123949	0.97[ASN][1000 genomes]
rs1126379	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1126380	0.97[ASN][1000 genomes]
rs1126381	0.97[ASN][1000 genomes]
rs1126382	0.97[ASN][1000 genomes]
rs13049613	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1883043	0.95[ASN][1000 genomes]
rs2094882	0.81[ASN][1000 genomes]
rs2150437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2210285	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210286	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329893	0.96[ASN][1000 genomes]
rs2329894	0.96[ASN][1000 genomes]
rs2838629	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2838631	0.97[ASN][1000 genomes]
rs2838636	0.94[ASN][1000 genomes]
rs2838637	0.95[ASN][1000 genomes]
rs2838638	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2838640	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2838651	0.81[ASN][1000 genomes]
rs2876985	0.96[ASN][1000 genomes]
rs3885809	0.90[ASN][1000 genomes]
rs4256045	0.91[ASN][1000 genomes]
rs4434080	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4818957	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4818958	0.97[ASN][1000 genomes]
rs4818961	0.97[ASN][1000 genomes]
rs4818963	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4818964	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013900	0.96[ASN][1000 genomes]
rs5013901	0.96[ASN][1000 genomes]
rs5013902	0.96[ASN][1000 genomes]
rs5013903	0.96[ASN][1000 genomes]
rs5013904	0.96[ASN][1000 genomes]
rs5013905	0.97[ASN][1000 genomes]
rs5013906	0.97[ASN][1000 genomes]
rs6518198	0.97[ASN][1000 genomes]
rs6518199	0.97[ASN][1000 genomes]
rs6518200	0.96[ASN][1000 genomes]
rs7280843	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7283339	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8126793	0.97[ASN][1000 genomes]
rs8127010	0.96[ASN][1000 genomes]
rs8127265	0.97[ASN][1000 genomes]
rs8129342	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8129858	0.97[ASN][1000 genomes]
rs8132352	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8132832	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8134266	0.97[ASN][1000 genomes]
rs926195	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9974804	0.90[ASN][1000 genomes]
rs9982962	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9984538	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv913956	chr21:46096964-46279505	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1062245	chr21:46096964-46332587	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv544478	chr21:46096964-46332587	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46101000-46122200	Weak transcription	Right Atrium	heart
2	chr21:46107600-46114800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr21:46107800-46114200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:46109000-46114800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr21:46112000-46114800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr21:46112000-46114800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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