Variant report

Variant	rs4476587
Chromosome Location	chr4:26680804-26680805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16878518	1.00[AFR][1000 genomes]
rs6851206	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26660600-26689000	Weak transcription	HMEC	breast
5	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
6	chr4:26663600-26684000	Weak transcription	Fetal Kidney	kidney
7	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
8	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:26666800-26685800	Weak transcription	Left Ventricle	heart
12	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
14	chr4:26674000-26681600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:26676000-26687000	Weak transcription	NHDF-Ad	bronchial
16	chr4:26676200-26681200	Weak transcription	HSMM	muscle
17	chr4:26676800-26685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:26678400-26681800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:26678400-26682400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
21	chr4:26678800-26682000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:26679000-26681800	ZNF genes & repeats	Thymus	Thymus
23	chr4:26679000-26682600	Strong transcription	Osteobl	bone
24	chr4:26679200-26681800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr4:26679400-26681000	Weak transcription	NH-A	brain
26	chr4:26679800-26681800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:26679800-26681800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr4:26679800-26681800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:26679800-26681800	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr4:26680000-26681400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:26680000-26681600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
32	chr4:26680000-26681800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:26680000-26681800	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr4:26680000-26682200	ZNF genes & repeats	Fetal Brain Female	brain
35	chr4:26680000-26682600	ZNF genes & repeats	Dnd41	blood
36	chr4:26680000-26688400	Weak transcription	NHLF	lung
37	chr4:26680400-26681000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:26680400-26681000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
39	chr4:26680400-26681400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr4:26680400-26681400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
41	chr4:26680400-26681600	ZNF genes & repeats	Liver	Liver
42	chr4:26680400-26691000	Weak transcription	Primary T cells from cord blood	blood
43	chr4:26680600-26681000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
44	chr4:26680600-26681400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:26680600-26681400	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr4:26680600-26681400	ZNF genes & repeats	Fetal Stomach	stomach
47	chr4:26680600-26681400	Strong transcription	Ovary	ovary
48	chr4:26680600-26681600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:26680600-26681600	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr4:26680600-26681600	ZNF genes & repeats	Fetal Lung	lung

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