Variant report

Variant	rs4476926
Chromosome Location	chr7:77992996-77992997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10259046	0.84[ASN][1000 genomes]
rs11773198	0.84[CEU][hapmap]
rs12674213	0.87[GIH][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.86[AMR][1000 genomes]
rs12705416	0.90[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1468596	0.85[TSI][hapmap]
rs35201850	0.92[ASN][1000 genomes]
rs4730234	0.87[GIH][hapmap]
rs56242268	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4476926	CACNA2D1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77981600-77994400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:77985600-77998200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:77990400-77994200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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