Variant report

Variant	rs4476941
Chromosome Location	chr7:121472791-121472792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10260118	1.00[EUR][1000 genomes]
rs1076430	1.00[EUR][1000 genomes]
rs1916884	1.00[EUR][1000 genomes]
rs6949130	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7793636	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7797647	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121470600-121473000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:121471200-121472800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121471400-121472800	Enhancers	HMEC	breast
4	chr7:121471400-121475600	Enhancers	Fetal Brain Male	brain
5	chr7:121471600-121472800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:121471600-121472800	Flanking Active TSS	NHEK	skin
7	chr7:121471800-121472800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:121471800-121473600	Enhancers	Fetal Lung	lung
9	chr7:121471800-121477000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:121472400-121472800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr7:121472400-121472800	Enhancers	Pancreas	Pancrea
12	chr7:121472400-121472800	Enhancers	Psoas Muscle	Psoas
13	chr7:121472400-121475000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:121472600-121472800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:121472600-121472800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:121472600-121472800	Enhancers	Brain Anterior Caudate	brain
17	chr7:121472600-121473800	Weak transcription	Brain Germinal Matrix	brain
18	chr7:121472600-121474400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:121472600-121474600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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