Variant report

Variant	rs4476968
Chromosome Location	chr8:92241460-92241461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10093786	0.85[GIH][hapmap]
rs10108936	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10956794	0.86[JPT][hapmap]
rs10956795	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10956797	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs11778758	0.86[JPT][hapmap]
rs11779990	0.82[MEX][hapmap]
rs11783034	0.85[JPT][hapmap]
rs11785003	0.86[JPT][hapmap]
rs12540975	0.86[JPT][hapmap]
rs12545986	0.95[JPT][hapmap]
rs12549426	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs13252561	0.91[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs13261830	0.91[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs13265714	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3923174	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs4128119	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4501547	0.81[JPT][hapmap]
rs4501551	0.83[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4524748	0.86[JPT][hapmap]
rs4577919	0.82[JPT][hapmap]
rs4596614	0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4620242	0.86[JPT][hapmap]
rs6471268	0.91[JPT][hapmap]
rs7832896	0.85[GIH][hapmap]
rs7845508	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2758623	chr8:91974499-92273724	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2759629	chr8:91974499-92273724	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4476968	INTS8	cis	cerebellum	SCAN
rs4476968	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92240000-92243800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:92240200-92241600	Enhancers	Fetal Kidney	kidney
3	chr8:92240200-92241600	Enhancers	Fetal Stomach	stomach
4	chr8:92240200-92241600	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:92240200-92242000	Enhancers	Fetal Lung	lung
6	chr8:92240600-92241600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:92241400-92244000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:92241400-92245000	Weak transcription	Colon Smooth Muscle	Colon

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