Variant report

Variant	rs4482738
Chromosome Location	chr4:151604372-151604373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4696496	1.00[AFR][1000 genomes]
rs4696630	0.95[AMR][1000 genomes]
rs66509882	1.00[AFR][1000 genomes]
rs6851019	0.95[AMR][1000 genomes]
rs7655761	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151571200-151604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:151577600-151637000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:151579400-151604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:151582200-151642800	Weak transcription	Left Ventricle	heart
6	chr4:151586400-151604800	Weak transcription	HSMM	muscle
7	chr4:151587000-151604600	Weak transcription	Small Intestine	intestine
8	chr4:151587400-151605000	Weak transcription	GM12878-XiMat	blood
9	chr4:151591200-151607600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:151593200-151604400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:151593200-151605200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:151593200-151610800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:151595000-151654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:151596000-151605800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:151596000-151608600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:151599600-151605800	Weak transcription	Fetal Lung	lung
17	chr4:151599600-151611200	Weak transcription	K562	blood
18	chr4:151599800-151605000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:151599800-151605200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151600000-151606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:151600800-151605000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:151600800-151606800	Weak transcription	Adipose Nuclei	Adipose
23	chr4:151601200-151604800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:151601200-151605000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:151601400-151604600	Weak transcription	HMEC	breast
26	chr4:151601400-151606000	Weak transcription	Brain Angular Gyrus	brain
27	chr4:151601600-151604600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:151601600-151604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:151601600-151604600	Weak transcription	NHEK	skin
30	chr4:151601600-151605000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:151601600-151644400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:151601800-151606000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:151602000-151604400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:151602000-151606000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:151602000-151606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:151602000-151615800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr4:151602000-151617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:151602200-151605200	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:151602200-151643800	Weak transcription	Fetal Intestine Small	intestine
40	chr4:151602400-151621800	Weak transcription	Fetal Intestine Large	intestine
41	chr4:151602600-151604800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:151602600-151605200	Weak transcription	Brain Substantia Nigra	brain
43	chr4:151602800-151605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:151602800-151605400	Weak transcription	Fetal Thymus	thymus
45	chr4:151602800-151605400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr4:151603000-151605200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:151603200-151605200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr4:151603400-151605200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:151603400-151605400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:151603600-151604600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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