Variant report

Variant	rs448297
Chromosome Location	chr11:26562379-26562380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1018032	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10742142	0.84[EUR][1000 genomes]
rs10742143	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10742144	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10742145	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10767551	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10767552	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10767553	0.82[EUR][1000 genomes]
rs10835001	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029600	0.85[EUR][1000 genomes]
rs11823219	0.85[EUR][1000 genomes]
rs2641390	0.82[EUR][1000 genomes]
rs2663165	0.83[AFR][1000 genomes]
rs2663170	0.81[AFR][1000 genomes]
rs2703404	0.83[AFR][1000 genomes]
rs2703405	0.83[AFR][1000 genomes]
rs2703406	0.83[AFR][1000 genomes]
rs2703407	0.83[AFR][1000 genomes]
rs2703408	0.83[AFR][1000 genomes]
rs2703410	0.82[AFR][1000 genomes]
rs2703411	0.82[AFR][1000 genomes]
rs2703412	0.82[AFR][1000 genomes]
rs2703418	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2703422	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs293940	0.83[EUR][1000 genomes]
rs293941	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs293943	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3105881	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3108883	0.83[AFR][1000 genomes]
rs35368493	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs364813	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs364850	0.81[AFR][1000 genomes]
rs365407	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs366611	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs367336	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs368914	0.81[AFR][1000 genomes]
rs371477	0.83[AFR][1000 genomes]
rs378401	0.81[AFR][1000 genomes]
rs379105	0.83[ASN][1000 genomes]
rs383158	0.81[AFR][1000 genomes]
rs386635	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs396863	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs398314	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs402093	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs404583	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs410036	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs419996	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420143	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs433132	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs434831	0.81[AFR][1000 genomes]
rs439065	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs439464	0.81[AFR][1000 genomes]
rs439763	0.81[AFR][1000 genomes]
rs443334	0.83[AFR][1000 genomes]
rs444534	0.81[AFR][1000 genomes]
rs444622	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs445651	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs448525	0.80[AFR][1000 genomes]
rs450519	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs453947	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs511371	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs550083	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs551759	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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