Variant report

Variant	rs4487235
Chromosome Location	chr3:118894700-118894701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:118892884..118895765-chr3:118897916..118901609,3	MCF-7	breast:
2	chr3:118894224..118896786-chr3:118901014..118905072,3	MCF-7	breast:
3	chr3:118877630..118879660-chr3:118892523..118895132,3	MCF-7	breast:
4	chr3:118877025..118878993-chr3:118892889..118894741,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6766922	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6784773	0.88[ASW][hapmap];0.86[CHB][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs9814507	0.94[ASW][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9868497	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118884000-118914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:118890200-118900600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:118890400-118894800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:118892600-118894800	Weak transcription	Placenta	Placenta
5	chr3:118893000-118895600	Weak transcription	Stomach Mucosa	stomach
6	chr3:118894200-118894800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:118894400-118894800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:118894400-118894800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:118894400-118894800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:118894400-118895400	Enhancers	Osteobl	bone
11	chr3:118894400-118895600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:118894400-118895600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:118894400-118895800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:118894400-118896200	Enhancers	Fetal Intestine Small	intestine
15	chr3:118894400-118896200	Enhancers	HMEC	breast
16	chr3:118894400-118896400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:118894400-118896800	Enhancers	NHEK	skin
18	chr3:118894600-118894800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:118894600-118894800	Enhancers	Hela-S3	cervix
20	chr3:118894600-118895200	Flanking Active TSS	A549	lung
21	chr3:118894600-118896200	Enhancers	Fetal Intestine Large	intestine

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