Variant report

Variant	rs4488423
Chromosome Location	chr15:75059387-75059388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74927132..74930132-chr15:75059009..75060638,3	MCF-7	breast:
2	chr15:75051704..75054183-chr15:75058091..75061237,4	K562	blood:
3	chr15:75059199..75061491-chr15:75101386..75103400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12437562	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350194	0.95[AMR][1000 genomes]
rs16972208	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16972381	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972486	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17861140	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2069514	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56992651	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58050869	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58322828	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59567621	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61620875	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
2	chr15:75047200-75063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75054800-75060600	Weak transcription	HepG2	liver
4	chr15:75055200-75063200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:75055400-75061000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:75055600-75060600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:75055600-75061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:75055600-75061000	Weak transcription	HUVEC	blood vessel
9	chr15:75055600-75065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:75056000-75060800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75056000-75061000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:75056000-75061000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:75056000-75061000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:75056000-75069000	Weak transcription	Lung	lung
15	chr15:75056200-75060400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:75056200-75061000	Weak transcription	HMEC	breast
17	chr15:75056200-75063200	Weak transcription	Spleen	Spleen
18	chr15:75056400-75059800	Weak transcription	Placenta	Placenta
19	chr15:75056400-75059800	Weak transcription	NHEK	skin
20	chr15:75056400-75060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:75056400-75060000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:75056400-75061000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links