Variant report

Variant	rs4494455
Chromosome Location	chr14:25555593-25555594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1062230	0.85[CEU][hapmap]
rs11159074	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11846310	0.81[AFR][1000 genomes]
rs11849156	0.86[EUR][1000 genomes]
rs11849193	0.86[EUR][1000 genomes]
rs11851239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1952498	0.81[AFR][1000 genomes]
rs1958390	0.97[ASN][1000 genomes]
rs2031938	0.97[ASN][1000 genomes]
rs4644786	0.87[ASN][1000 genomes]
rs61979909	0.98[ASN][1000 genomes]
rs61979910	0.98[ASN][1000 genomes]
rs6574173	0.86[EUR][1000 genomes]
rs7159586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007508	0.86[EUR][1000 genomes]
rs928075	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4494455	REM2	cis	cerebellum	SCAN
rs4494455	RNASE13	cis	cerebellum	SCAN
rs4494455	STXBP6	cis	parietal	SCAN
rs4494455	PRMT5	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25547000-25561600	Weak transcription	Pancreas	Pancrea
2	chr14:25551800-25555600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:25554000-25555600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:25555200-25558200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:25555400-25555600	Enhancers	Right Ventricle	heart
6	chr14:25555400-25555600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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