Variant report

Variant	rs4494943
Chromosome Location	chr13:35982826-35982827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13081918	0.94[ASN][1000 genomes]
rs13095680	0.80[EUR][1000 genomes]
rs1488582	0.80[EUR][1000 genomes]
rs2129939	0.81[EUR][1000 genomes]
rs4134190	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57503916	0.95[ASN][1000 genomes]
rs59677809	0.94[ASN][1000 genomes]
rs60614615	0.95[ASN][1000 genomes]
rs6803354	0.83[ASN][1000 genomes]
rs73878557	0.83[ASN][1000 genomes]
rs985702	0.80[EUR][1000 genomes]
rs985703	0.95[ASN][1000 genomes]
rs989197	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050480	chr13:35772933-36384651	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv899990	chr13:35921077-36052726	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:35982200-35983200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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