Variant report

Variant	rs4495087
Chromosome Location	chr4:158903712-158903713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10021199	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs10517686	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11100152	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11939690	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17037201	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17037232	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17212714	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17279270	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2594759	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2594760	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2725492	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2725504	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2725505	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2725506	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2725507	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2725508	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4234916	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4510503	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4549446	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6536289	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6536290	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6820988	0.91[CEU][hapmap]
rs6834839	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6837943	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7678302	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs9997618	0.90[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3418706	chr4:158903393-158904344	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158900000-158904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:158900200-158903800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:158900400-158903800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:158901600-158903800	Weak transcription	Aorta	Aorta
5	chr4:158903400-158903800	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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