Variant report

Variant	rs4496370
Chromosome Location	chr2:30556739-30556740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30552317..30554579-chr2:30556259..30558037,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11127271	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4530413	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4952122	0.89[EUR][1000 genomes]
rs7604316	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv2663	chr2:30522750-30567544	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30549600-30557800	Weak transcription	Stomach Mucosa	stomach
2	chr2:30553600-30559600	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:30553800-30559400	Enhancers	Primary T cells from cord blood	blood
4	chr2:30554000-30559600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:30554200-30569800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:30554800-30557400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:30555000-30557200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:30555000-30557400	Weak transcription	Right Ventricle	heart
9	chr2:30555000-30557600	Enhancers	GM12878-XiMat	blood
10	chr2:30555000-30557800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:30555000-30558200	Enhancers	Primary B cells from cord blood	blood
12	chr2:30555000-30559600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr2:30555000-30559800	Enhancers	Fetal Thymus	thymus
14	chr2:30555200-30557200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:30555200-30557400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:30555200-30557400	Weak transcription	Pancreas	Pancrea
17	chr2:30555200-30557600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr2:30555200-30557600	Weak transcription	Esophagus	oesophagus
19	chr2:30555200-30557800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:30555200-30558000	Weak transcription	Fetal Lung	lung
21	chr2:30555200-30558400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:30555200-30559600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:30555200-30559600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr2:30555200-30559800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr2:30555400-30559000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:30555400-30559800	Enhancers	Thymus	Thymus
27	chr2:30555600-30557200	Enhancers	Lung	lung
28	chr2:30555600-30557800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:30555600-30557800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr2:30555800-30556800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr2:30556000-30557400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:30556000-30560400	Enhancers	Fetal Heart	heart
33	chr2:30556000-30561000	Enhancers	Spleen	Spleen
34	chr2:30556200-30557400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr2:30556200-30557800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr2:30556200-30559200	Enhancers	Fetal Muscle Leg	muscle
37	chr2:30556200-30560400	Enhancers	Left Ventricle	heart
38	chr2:30556400-30557200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:30556400-30557400	Weak transcription	Adipose Nuclei	Adipose
40	chr2:30556400-30557600	Weak transcription	Fetal Stomach	stomach
41	chr2:30556400-30557800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr2:30556400-30558000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr2:30556600-30556800	Enhancers	Fetal Muscle Trunk	muscle
44	chr2:30556600-30557000	Enhancers	Sigmoid Colon	Sigmoid Colon

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