Variant report

Variant	rs4497095
Chromosome Location	chrX:79567952-79567953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1113265	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap]
rs1494481	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[YRI][hapmap]
rs2088057	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.94[YRI][hapmap]
rs5912422	0.83[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap]
rs5913254	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap]
rs5913258	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap]
rs5913263	0.84[CHB][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79563400-79568000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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