Variant report

Variant	rs4498007
Chromosome Location	chr3:111893400-111893401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11919685	1.00[AMR][1000 genomes]
rs4423738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682091	0.80[AFR][1000 genomes]
rs4682364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57172307	1.00[AMR][1000 genomes]
rs7637868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111885400-111894000	Weak transcription	Gastric	stomach
2	chr3:111885400-111897200	Weak transcription	Pancreas	Pancrea
3	chr3:111885400-111904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111885400-111904600	Weak transcription	Left Ventricle	heart
5	chr3:111892400-111904600	Weak transcription	Thymus	Thymus
6	chr3:111893200-111894000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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