Variant report

Variant	rs4498109
Chromosome Location	chr4:89806092-89806093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10019862	0.84[ASN][1000 genomes]
rs10028121	0.84[ASN][1000 genomes]
rs10033435	0.81[ASN][1000 genomes]
rs10033476	0.81[ASN][1000 genomes]
rs1246630	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1246633	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1246637	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1246638	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1246641	0.88[ASN][1000 genomes]
rs1272570	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13106968	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13148439	0.84[ASN][1000 genomes]
rs1458552	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458553	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458555	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1903004	0.84[ASN][1000 genomes]
rs1903009	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045516	0.88[ASN][1000 genomes]
rs2125410	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2446295	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2446302	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2446309	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2464521	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2464526	0.84[ASN][1000 genomes]
rs2609254	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609266	0.84[ASN][1000 genomes]
rs2609274	0.88[ASN][1000 genomes]
rs2609278	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2609281	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2609284	0.81[ASN][1000 genomes]
rs2704572	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2704588	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2704591	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2704593	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2704602	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2704603	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2704606	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28624770	0.84[ASN][1000 genomes]
rs28658282	0.84[ASN][1000 genomes]
rs2869965	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2869968	0.88[ASN][1000 genomes]
rs59698155	0.84[ASN][1000 genomes]
rs7673427	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7697878	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922027	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs973680	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs987314	0.88[ASN][1000 genomes]
rs993358	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89801800-89810600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:89802200-89820600	Weak transcription	Aorta	Aorta
3	chr4:89802600-89812800	Weak transcription	K562	blood
4	chr4:89802600-89825600	Weak transcription	Ovary	ovary
5	chr4:89802800-89809400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:89802800-89810000	Weak transcription	Placenta	Placenta
7	chr4:89805400-89817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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