Variant report

Variant	rs4499225
Chromosome Location	chr16:81899211-81899212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81898588..81900503-chr16:81902752..81904283,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10871423	0.81[ASN][1000 genomes]
rs11150420	0.82[ASN][1000 genomes]
rs11150421	0.83[ASN][1000 genomes]
rs12102309	0.92[ASN][1000 genomes]
rs12445580	0.93[ASN][1000 genomes]
rs12716921	0.92[ASN][1000 genomes]
rs12716922	0.92[ASN][1000 genomes]
rs12918486	0.85[ASN][1000 genomes]
rs3934985	0.82[ASN][1000 genomes]
rs4889420	0.93[ASN][1000 genomes]
rs4889421	0.84[ASN][1000 genomes]
rs4997770	0.92[ASN][1000 genomes]
rs4997771	0.92[ASN][1000 genomes]
rs4997772	0.92[ASN][1000 genomes]
rs4997773	0.92[ASN][1000 genomes]
rs4997775	0.92[ASN][1000 genomes]
rs55822905	0.92[ASN][1000 genomes]
rs55873405	0.88[ASN][1000 genomes]
rs56215311	0.88[ASN][1000 genomes]
rs7187163	0.92[ASN][1000 genomes]
rs7187837	0.92[ASN][1000 genomes]
rs7189106	0.85[ASN][1000 genomes]
rs7189462	0.86[ASN][1000 genomes]
rs7189843	0.84[ASN][1000 genomes]
rs7192509	0.92[ASN][1000 genomes]
rs7192535	0.92[ASN][1000 genomes]
rs7195281	0.93[ASN][1000 genomes]
rs7196410	0.84[ASN][1000 genomes]
rs7197677	0.85[ASN][1000 genomes]
rs7197685	0.92[ASN][1000 genomes]
rs7197689	0.92[ASN][1000 genomes]
rs7197832	0.89[ASN][1000 genomes]
rs7198813	0.92[ASN][1000 genomes]
rs7199578	0.92[ASN][1000 genomes]
rs7199941	0.92[ASN][1000 genomes]
rs7200324	0.92[ASN][1000 genomes]
rs7200626	0.90[ASN][1000 genomes]
rs7200783	0.81[ASN][1000 genomes]
rs7202250	0.93[ASN][1000 genomes]
rs72837428	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72837429	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7342694	0.92[ASN][1000 genomes]
rs8058290	0.81[ASN][1000 genomes]
rs9923780	0.92[ASN][1000 genomes]
rs9924101	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
3	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:81887600-81901800	Weak transcription	Fetal Kidney	kidney
5	chr16:81892000-81900600	Weak transcription	Thymus	Thymus
6	chr16:81894400-81900400	Weak transcription	Liver	Liver
7	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
8	chr16:81895800-81902600	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr16:81896000-81900800	Weak transcription	Esophagus	oesophagus
10	chr16:81896200-81900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:81896400-81900000	Weak transcription	HUVEC	blood vessel
12	chr16:81896400-81902400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:81896800-81910400	Weak transcription	Gastric	stomach
14	chr16:81897200-81899400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:81897400-81901800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr16:81897600-81902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81897600-81902200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:81897600-81902600	Genic enhancers	GM12878-XiMat	blood
19	chr16:81897800-81899400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr16:81898200-81899400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr16:81898400-81900600	Enhancers	Primary B cells from cord blood	blood
22	chr16:81898600-81901200	Enhancers	Lung	lung
23	chr16:81898800-81899800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr16:81898800-81900000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr16:81898800-81900400	Weak transcription	Left Ventricle	heart
26	chr16:81898800-81907400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr16:81898800-81912400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr16:81899000-81900400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr16:81899000-81900400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr16:81899000-81901600	Weak transcription	Right Ventricle	heart
31	chr16:81899000-81902000	Enhancers	Spleen	Spleen
32	chr16:81899000-81904000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr16:81899000-81934600	Weak transcription	Right Atrium	heart
34	chr16:81899200-81899600	Weak transcription	Adipose Nuclei	Adipose
35	chr16:81899200-81900200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr16:81899200-81900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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