Variant report

Variant	rs4499466
Chromosome Location	chr2:49026760-49026761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:49022010..49024033-chr2:49025700..49028628,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10164556	0.84[ASN][1000 genomes]
rs13001380	0.86[ASN][1000 genomes]
rs13033031	0.80[ASN][1000 genomes]
rs3935257	0.86[ASN][1000 genomes]
rs4072965	0.87[ASN][1000 genomes]
rs4271811	0.88[ASN][1000 genomes]
rs4325806	0.83[ASN][1000 genomes]
rs4462824	0.80[ASN][1000 genomes]
rs4583516	0.80[ASN][1000 genomes]
rs4602262	0.93[ASN][1000 genomes]
rs4621206	0.84[ASN][1000 genomes]
rs55649687	0.83[ASN][1000 genomes]
rs55671226	0.83[ASN][1000 genomes]
rs56406984	0.82[ASN][1000 genomes]
rs61349130	0.81[ASN][1000 genomes]
rs6419618	0.83[ASN][1000 genomes]
rs72811865	0.82[ASN][1000 genomes]
rs72811883	0.83[ASN][1000 genomes]
rs72811894	0.82[ASN][1000 genomes]
rs72811897	0.81[ASN][1000 genomes]
rs72811898	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010494	chr2:48767055-49027310	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv998864	chr2:49015878-49230000	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1014434	chr2:49016279-49053699	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48994600-49080200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:49018200-49027000	Weak transcription	Right Atrium	heart
3	chr2:49025800-49027600	Enhancers	Fetal Intestine Large	intestine
4	chr2:49026200-49027600	Enhancers	Fetal Intestine Small	intestine
5	chr2:49026600-49027000	Weak transcription	Ovary	ovary

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