Variant report

Variant	rs4501429
Chromosome Location	chr6:48586137-48586138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10807395	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1365720	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1427156	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443628	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1573203	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs171452	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1991355	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991356	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052800	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2396874	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs243121	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs243123	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs243124	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs243127	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs243128	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs243129	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs243130	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs243134	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs243135	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2912622	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2912630	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2912634	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2996245	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2996251	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3010522	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3010523	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3010527	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3010531	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6925069	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6937487	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7750141	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9296599	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9296602	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296603	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9369799	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs967600	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603035	chr6:47902243-48700995	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885877	chr6:48117685-48626930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv462942	chr6:48480264-48598199	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv885878	chr6:48481466-48623408	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830658	chr6:48497904-48632523	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2752125	chr6:48575963-48718589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48584800-48587600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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