Variant report

Variant	rs4502063
Chromosome Location	chr12:10114437-10114438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11832249	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11835745	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2961539	0.89[AMR][1000 genomes]
rs4764228	1.00[MEX][hapmap]
rs4764229	1.00[MEX][hapmap]
rs55816893	0.89[AMR][1000 genomes]
rs56335515	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56388724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7137050	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7297177	1.00[MEX][hapmap]
rs7309228	1.00[MEX][hapmap]
rs74065414	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74065416	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74065422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74065423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs999184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10110200-10115400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:10113400-10114800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr12:10113600-10114800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:10113800-10114600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:10113800-10114600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:10113800-10115400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:10114000-10115200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:10114000-10115200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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