Variant report

Variant	rs4502450
Chromosome Location	chr2:21802917-21802918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1006777	0.86[AFR][1000 genomes]
rs1158091	0.86[AFR][1000 genomes]
rs1477474	0.86[AFR][1000 genomes]
rs2059394	0.86[AFR][1000 genomes]
rs2161899	0.86[AFR][1000 genomes]
rs2216877	0.86[AFR][1000 genomes]
rs4309608	0.86[AFR][1000 genomes]
rs6723521	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21790600-21804800	Weak transcription	Aorta	Aorta
2	chr2:21802800-21803200	Enhancers	Gastric	stomach
3	chr2:21802800-21803600	Enhancers	Brain Germinal Matrix	brain
4	chr2:21802800-21803800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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