Variant report

Variant	rs4502887
Chromosome Location	chr6:71910211-71910212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12200732	0.90[ASN][1000 genomes]
rs12207623	0.90[ASN][1000 genomes]
rs4435913	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4585520	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9351805	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71908000-71914400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:71908000-71915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:71908000-71915400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:71908600-71910400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:71908600-71914400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:71909000-71910400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:71909000-71912600	Weak transcription	HSMM	muscle
8	chr6:71909000-71912600	Weak transcription	HSMMtube	muscle
9	chr6:71909000-71913000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:71909200-71914200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:71909600-71910400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:71909600-71914000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:71910200-71914600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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