Variant report

Variant	rs4507806
Chromosome Location	chr8:121880704-121880705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121820968..121821651-chr8:121880472..121881467,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094772	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10096496	0.82[EUR][1000 genomes]
rs10111219	0.81[EUR][1000 genomes]
rs10111227	0.86[ASN][1000 genomes]
rs13277545	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13279396	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28490321	0.82[EUR][1000 genomes]
rs2891944	1.00[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2891945	0.82[EUR][1000 genomes]
rs35587464	0.89[CEU][hapmap];1.00[LWK][hapmap];0.89[AFR][1000 genomes]
rs57231964	0.84[EUR][1000 genomes]
rs6469959	0.85[EUR][1000 genomes]
rs6469960	0.81[EUR][1000 genomes]
rs6469962	0.85[EUR][1000 genomes]
rs6469963	0.81[EUR][1000 genomes]
rs7010909	0.85[EUR][1000 genomes]
rs7016191	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121874200-121881000	Weak transcription	Psoas Muscle	Psoas
2	chr8:121874800-121881000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:121875200-121880800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:121880000-121880800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:121880000-121880800	Enhancers	Liver	Liver
6	chr8:121880400-121880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:121880400-121880800	Enhancers	Osteobl	bone
8	chr8:121880400-121881000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:121880400-121881000	Flanking Active TSS	HepG2	liver
10	chr8:121880400-121881400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:121880400-121881400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:121880400-121881400	Active TSS	NHDF-Ad	bronchial
13	chr8:121880600-121881000	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr8:121880600-121881000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr8:121880600-121881000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:121880600-121881200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:121880600-121881400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:121880600-121881400	Enhancers	Primary B cells from cord blood	blood
19	chr8:121880600-121881400	Enhancers	Primary B cells from peripheral blood	blood
20	chr8:121880600-121881400	Active TSS	Primary hematopoietic stem cells	blood
21	chr8:121880600-121881400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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