Variant report

Variant	rs4509676
Chromosome Location	chr10:90975117-90975118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10749598	0.87[ASN][1000 genomes]
rs10788637	0.87[ASN][1000 genomes]
rs10887951	1.00[JPT][hapmap]
rs10887952	1.00[JPT][hapmap]
rs2863759	1.00[JPT][hapmap]
rs6586174	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs6586192	1.00[JPT][hapmap]
rs7075004	1.00[JPT][hapmap]
rs7096890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv517170	chr10:90931602-90975207	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467422	chr10:90940687-90975207	Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467423	chr10:90940687-90975207	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551858	chr10:90940687-90975207	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1038123	chr10:90954417-90992129	Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1040280	chr10:90962032-90979093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1042428	chr10:90962252-90977164	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90967600-90987200	Weak transcription	Aorta	Aorta
2	chr10:90968200-90977000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:90968200-90977000	Weak transcription	HSMM	muscle
4	chr10:90968200-90979800	Weak transcription	Ovary	ovary
5	chr10:90968200-90983400	Weak transcription	NHLF	lung
6	chr10:90968200-90994800	Weak transcription	Gastric	stomach
7	chr10:90968400-90975200	Weak transcription	NHEK	skin
8	chr10:90968400-90979400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:90968400-90979400	Weak transcription	Esophagus	oesophagus
10	chr10:90968400-90979400	Weak transcription	Lung	lung
11	chr10:90968400-90979600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:90968400-90987200	Weak transcription	Pancreas	Pancrea
13	chr10:90968400-91000800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:90968400-91002200	Weak transcription	Right Ventricle	heart
15	chr10:90968600-90977000	Weak transcription	HUVEC	blood vessel
16	chr10:90969000-90977000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:90969600-90977000	Weak transcription	Fetal Thymus	thymus
18	chr10:90970800-90984600	Weak transcription	Fetal Brain Female	brain
19	chr10:90971000-90977200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:90971400-90975200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:90971400-90977000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:90971400-90977000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:90971400-90980600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:90971400-90984600	Weak transcription	Fetal Brain Male	brain
25	chr10:90971600-90977000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:90971600-90977000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:90971800-90977000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:90972000-90977000	Weak transcription	Hela-S3	cervix
29	chr10:90972200-90977000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:90972800-90977000	Weak transcription	HSMMtube	muscle
31	chr10:90973000-90979400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:90973200-90975800	Genic enhancers	Brain Anterior Caudate	brain
33	chr10:90973200-90977000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:90973200-90977600	Enhancers	Brain Angular Gyrus	brain
35	chr10:90973400-90975600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:90973400-90975800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:90973400-90976000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr10:90973400-90976000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:90973400-90976000	Strong transcription	Placenta	Placenta
40	chr10:90973400-90976000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:90973400-90977000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:90973400-90977000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:90973400-90977000	Weak transcription	Fetal Lung	lung
44	chr10:90973400-90977000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr10:90973400-90977000	Weak transcription	Stomach Mucosa	stomach
46	chr10:90973600-90975800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:90973600-90975800	Strong transcription	Adipose Nuclei	Adipose
48	chr10:90973600-90975800	Strong transcription	Liver	Liver
49	chr10:90973600-90976000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr10:90973600-90976000	Strong transcription	Primary B cells from cord blood	blood

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