Variant report

Variant	rs451165
Chromosome Location	chr6:133213731-133213732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133212290..133214095-chr6:133220158..133223088,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPS12-4	chr6:133213063-133214958	NONHSAT114984

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1124450	0.91[ASN][1000 genomes]
rs12193918	0.91[ASN][1000 genomes]
rs12200907	0.91[ASN][1000 genomes]
rs12206120	0.85[ASN][1000 genomes]
rs12207260	0.89[ASN][1000 genomes]
rs1323714	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1359142	0.91[ASN][1000 genomes]
rs1408062	0.92[ASN][1000 genomes]
rs1408063	0.92[ASN][1000 genomes]
rs1408064	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1674714	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1965895	0.91[ASN][1000 genomes]
rs379362	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs392493	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs396268	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs405572	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs421500	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4448124	0.98[ASN][1000 genomes]
rs4897616	0.93[ASN][1000 genomes]
rs4897617	0.93[ASN][1000 genomes]
rs4897618	0.94[ASN][1000 genomes]
rs6569853	0.83[ASN][1000 genomes]
rs6569854	0.84[ASN][1000 genomes]
rs6569857	0.91[ASN][1000 genomes]
rs6569858	0.91[ASN][1000 genomes]
rs6569859	0.91[ASN][1000 genomes]
rs6925225	0.91[ASN][1000 genomes]
rs6926217	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755895	0.85[ASN][1000 genomes]
rs7743635	0.92[ASN][1000 genomes]
rs7744235	0.92[ASN][1000 genomes]
rs7744426	0.87[ASN][1000 genomes]
rs7750176	0.94[ASN][1000 genomes]
rs7751333	0.91[ASN][1000 genomes]
rs7751359	0.91[ASN][1000 genomes]
rs7755422	0.91[ASN][1000 genomes]
rs7756588	0.91[ASN][1000 genomes]
rs7756801	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759900	0.91[ASN][1000 genomes]
rs7764152	0.85[ASN][1000 genomes]
rs7764252	0.92[ASN][1000 genomes]
rs7764726	0.90[ASN][1000 genomes]
rs7766944	0.91[ASN][1000 genomes]
rs7768470	0.91[ASN][1000 genomes]
rs9321377	0.85[ASN][1000 genomes]
rs9321380	0.91[ASN][1000 genomes]
rs9321382	0.86[ASN][1000 genomes]
rs9321383	0.86[ASN][1000 genomes]
rs9373030	0.91[ASN][1000 genomes]
rs9375924	0.92[ASN][1000 genomes]
rs9375925	0.92[ASN][1000 genomes]
rs9402460	0.91[ASN][1000 genomes]
rs9402462	0.92[ASN][1000 genomes]
rs9493470	0.98[ASN][1000 genomes]
rs9493474	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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