Variant report

Variant	rs4513112
Chromosome Location	chr16:80000283-80000284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11150235	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11862161	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12051447	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12051451	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34972526	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35651281	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36078655	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146392	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4454988	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4468637	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4603570	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4606730	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5029357	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5029358	0.85[AMR][1000 genomes]
rs5029360	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5029362	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5029363	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66539665	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7188398	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7188559	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8045969	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8062687	0.81[AMR][1000 genomes]
rs9941084	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9941093	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4513112	VAT1L	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79997000-80006200	Weak transcription	Right Atrium	heart
2	chr16:79999800-80000400	Enhancers	K562	blood
3	chr16:80000200-80000600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:80000200-80000600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr16:80000200-80000600	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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