Variant report

Variant	rs4513617
Chromosome Location	chr4:159001197-159001198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003459	0.83[EUR][1000 genomes]
rs10003566	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10005547	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100149	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503001	0.80[EUR][1000 genomes]
rs12506818	0.81[ASN][1000 genomes]
rs12645318	0.85[ASN][1000 genomes]
rs13106234	0.80[EUR][1000 genomes]
rs28477319	0.83[EUR][1000 genomes]
rs28514324	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4362869	0.84[EUR][1000 genomes]
rs4388135	0.86[EUR][1000 genomes]
rs4691452	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6536298	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843728	0.83[EUR][1000 genomes]
rs6844184	0.83[EUR][1000 genomes]
rs7656059	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9968557	0.80[EUR][1000 genomes]
rs9993747	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159000400-159001200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:159000600-159001200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:159000600-159001200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:159000600-159001800	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:159000800-159001200	Enhancers	Adipose Nuclei	Adipose
6	chr4:159000800-159001200	Enhancers	Fetal Muscle Leg	muscle
7	chr4:159001000-159001400	Weak transcription	Fetal Stomach	stomach
8	chr4:159001000-159001800	Enhancers	Ovary	ovary
9	chr4:159001000-159002000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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