Variant report

Variant	rs4513723
Chromosome Location	chr5:36357507-36357508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1500222	1.00[AMR][1000 genomes]
rs57347280	1.00[AMR][1000 genomes]
rs73081952	1.00[AMR][1000 genomes]
rs73081983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3489731	chr5:36356195-36358693	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3489728	chr5:36356645-36358543	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3489734	chr5:36357260-36357676	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3489733	chr5:36357276-36357646	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3469117	chr5:36357291-36357639	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3469118	chr5:36357297-36357649	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3469116	chr5:36357309-36357592	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3489727	chr5:36357317-36357616	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv4143	chr5:36357340-36357680	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3469120	chr5:36357360-36357571	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3489732	chr5:36357370-36357572	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3469121	chr5:36357375-36357567	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3489735	chr5:36357375-36357567	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv328071	chr5:36357376-36357566	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36344400-36362000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:36354600-36359400	Weak transcription	NHEK	skin
3	chr5:36355800-36359200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:36356200-36359600	Weak transcription	Hela-S3	cervix
5	chr5:36356400-36358400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36357000-36360400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:36357200-36357600	Enhancers	Fetal Stomach	stomach
8	chr5:36357200-36357800	Enhancers	Right Atrium	heart
9	chr5:36357200-36358000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:36357200-36358000	Enhancers	Left Ventricle	heart
11	chr5:36357200-36358200	Enhancers	Fetal Muscle Leg	muscle
12	chr5:36357200-36358200	Enhancers	NHLF	lung
13	chr5:36357200-36358400	Enhancers	Primary hematopoietic stem cells	blood
14	chr5:36357200-36358400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:36357200-36358800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:36357200-36359400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:36357200-36359400	Enhancers	Fetal Heart	heart
18	chr5:36357200-36359800	Enhancers	HSMM	muscle
19	chr5:36357200-36360000	Enhancers	Fetal Lung	lung
20	chr5:36357200-36360400	Enhancers	Osteobl	bone
21	chr5:36357200-36360800	Enhancers	HSMMtube	muscle
22	chr5:36357400-36357600	Flanking Active TSS	NH-A	brain
23	chr5:36357400-36358000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:36357400-36358200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:36357400-36358400	Enhancers	NHDF-Ad	bronchial
26	chr5:36357400-36358600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:36357400-36358800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:36357400-36360400	Enhancers	Placenta	Placenta

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