Variant report

Variant	rs451413
Chromosome Location	chr6:25475826-25475827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25471228..25473427-chr6:25475104..25477874,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10498725	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs301398	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs301401	0.93[ASN][1000 genomes]
rs395935	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs429964	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55946641	0.93[ASN][1000 genomes]
rs72839015	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs912449	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432856	chr6:25468825-25494666	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25436200-25481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:25446800-25493600	Weak transcription	Left Ventricle	heart
3	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:25449400-25515800	Weak transcription	Lung	lung
5	chr6:25450400-25488400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:25452400-25476000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:25455800-25476000	Weak transcription	Aorta	Aorta
8	chr6:25456400-25499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:25456400-25515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
11	chr6:25460200-25476000	Weak transcription	NHEK	skin
12	chr6:25462800-25477600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:25463000-25476000	Weak transcription	HSMMtube	muscle
14	chr6:25463000-25490000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:25463200-25481200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:25463800-25487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:25464000-25498800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:25464200-25518400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:25464800-25490000	Weak transcription	Hela-S3	cervix
21	chr6:25465000-25482800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:25465200-25476200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:25465400-25476000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:25465400-25499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:25466200-25476400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:25466400-25516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:25466800-25515800	Weak transcription	Fetal Stomach	stomach
28	chr6:25468400-25488400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:25469400-25486000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:25469800-25476400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:25469800-25490200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:25470400-25477600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:25471200-25490200	Weak transcription	Small Intestine	intestine
34	chr6:25471600-25486200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:25471600-25597200	Weak transcription	Gastric	stomach
36	chr6:25471800-25493200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:25472400-25477000	Weak transcription	Placenta	Placenta
38	chr6:25473000-25476000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:25473400-25476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:25473400-25482800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:25473400-25490200	Weak transcription	Ovary	ovary
42	chr6:25473400-25495400	Weak transcription	Pancreas	Pancrea
43	chr6:25473600-25476000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:25473600-25481600	Weak transcription	Fetal Kidney	kidney
45	chr6:25473600-25482800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:25473600-25483400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:25473600-25499600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:25473600-25516000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:25474000-25484000	Weak transcription	Fetal Intestine Small	intestine
50	chr6:25474000-25484200	Weak transcription	Fetal Thymus	thymus

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