Variant report

Variant	rs4515855
Chromosome Location	chr1:174588920-174588921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16847121	0.83[EUR][1000 genomes]
rs16847206	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2179108	0.85[EUR][1000 genomes]
rs2179109	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41266052	0.83[EUR][1000 genomes]
rs41397546	0.85[EUR][1000 genomes]
rs56864802	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57132183	0.83[EUR][1000 genomes]
rs57243929	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57648142	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57898822	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58063264	0.81[EUR][1000 genomes]
rs59190079	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59262554	0.83[EUR][1000 genomes]
rs59354288	0.85[EUR][1000 genomes]
rs60240702	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60665754	0.85[EUR][1000 genomes]
rs60723087	0.85[EUR][1000 genomes]
rs60865584	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60885521	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61329817	0.85[EUR][1000 genomes]
rs6673649	0.85[EUR][1000 genomes]
rs6692753	0.85[EUR][1000 genomes]
rs6695956	0.85[EUR][1000 genomes]
rs6703536	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7543502	0.85[EUR][1000 genomes]
rs7547843	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv999295	chr1:174457532-174596961	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3434296	chr1:174556344-174594264	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174572800-174606200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr1:174573200-174589000	Weak transcription	Ovary	ovary
3	chr1:174582800-174606400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:174583200-174589200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:174587600-174594600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:174587600-174606600	Weak transcription	Primary B cells from cord blood	blood
7	chr1:174587600-174609200	Weak transcription	Pancreas	Pancrea
8	chr1:174588400-174593000	Weak transcription	Fetal Intestine Small	intestine

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