Variant report

Variant	rs4517413
Chromosome Location	chr10:27254142-27254143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27252249..27255094-chr10:27256510..27259627,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10829142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015395	0.84[AMR][1000 genomes]
rs11015396	0.85[AMR][1000 genomes]
rs11015399	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11015402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015404	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015406	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015424	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015425	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015433	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593903	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594888	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817541	0.84[AMR][1000 genomes]
rs12356296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360473	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762669	0.83[AMR][1000 genomes]
rs12764274	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12771138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17748392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34262369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34681950	0.84[AMR][1000 genomes]
rs35109865	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282679	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35660544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56057299	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61850963	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850992	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796833	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4517413	LINC00202-1	cis	Muscle Skeletal	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27243000-27294800	Weak transcription	Liver	Liver
3	chr10:27244400-27257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
5	chr10:27245600-27255000	Weak transcription	Left Ventricle	heart
6	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:27245600-27270200	Weak transcription	Ovary	ovary
8	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
10	chr10:27247600-27258000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
12	chr10:27247800-27269200	Weak transcription	Lung	lung
13	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:27249800-27258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:27249800-27258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
17	chr10:27251000-27254800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:27251000-27255400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:27251600-27257200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:27251800-27265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:27252000-27260200	Weak transcription	Psoas Muscle	Psoas
23	chr10:27253400-27255000	Weak transcription	Brain Anterior Caudate	brain
24	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:27253600-27264800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
27	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links