Variant report

Variant	rs4518645
Chromosome Location	chr8:69710639-69710640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10105025	1.00[ASN][1000 genomes]
rs11993238	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935068	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs61141135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61513389	1.00[AMR][1000 genomes]
rs6996742	1.00[EUR][1000 genomes]
rs9942750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69702800-69711200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:69702800-69711800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:69704200-69711800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:69704200-69713200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:69708200-69712000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:69708400-69713200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:69708600-69711200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:69708600-69711200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:69708600-69711400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:69710000-69711400	Enhancers	Osteobl	bone
11	chr8:69710000-69711800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:69710400-69711400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:69710400-69711400	Enhancers	HSMM	muscle
14	chr8:69710400-69711800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:69710600-69711400	Enhancers	NHDF-Ad	bronchial
16	chr8:69710600-69711800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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