Variant report

Variant	rs451925
Chromosome Location	chr14:77727376-77727377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1046428	1.00[YRI][hapmap]
rs12894594	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1861888	0.93[CEU][hapmap];0.88[CHB][hapmap]
rs2270419	0.93[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3209079	0.93[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs369202	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815625	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs383064	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4141640	0.93[CEU][hapmap];0.88[CHB][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899649	0.93[CEU][hapmap]
rs4903566	0.80[CEU][hapmap];0.88[CHB][hapmap]
rs7146741	0.81[AFR][1000 genomes]
rs8009177	1.00[YRI][hapmap]
rs972725	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77709800-77729600	Weak transcription	Fetal Brain Male	brain
2	chr14:77711200-77731000	Weak transcription	Spleen	Spleen
3	chr14:77723000-77734000	Weak transcription	Gastric	stomach
4	chr14:77725000-77730400	Weak transcription	Fetal Brain Female	brain
5	chr14:77725600-77727600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr14:77726000-77727600	Weak transcription	Esophagus	oesophagus
7	chr14:77726200-77728000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:77726600-77727800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:77726600-77728000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:77726800-77727400	Enhancers	Brain Anterior Caudate	brain
11	chr14:77726800-77727400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:77726800-77727800	Enhancers	Primary hematopoietic stem cells	blood
13	chr14:77726800-77727800	Enhancers	Brain Substantia Nigra	brain
14	chr14:77727000-77727400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr14:77727000-77727600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:77727000-77727800	Enhancers	Brain Hippocampus Middle	brain
17	chr14:77727200-77727400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:77727200-77727400	Bivalent Enhancer	Fetal Stomach	stomach
19	chr14:77727200-77732000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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