Variant report

Variant	rs4520205
Chromosome Location	chr8:121014669-121014670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11986039	0.93[ASN][1000 genomes]
rs11986628	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11993265	0.88[ASN][1000 genomes]
rs1401810	0.93[ASN][1000 genomes]
rs1401812	0.90[ASN][1000 genomes]
rs1401813	0.90[ASN][1000 genomes]
rs1543200	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543201	0.92[ASN][1000 genomes]
rs1850886	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1879150	0.92[ASN][1000 genomes]
rs2037342	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2037343	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2037344	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2139435	0.86[EUR][1000 genomes]
rs2139436	0.86[EUR][1000 genomes]
rs2139438	0.91[ASN][1000 genomes]
rs2139439	0.90[ASN][1000 genomes]
rs2176748	0.90[ASN][1000 genomes]
rs2176749	0.90[ASN][1000 genomes]
rs2176751	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271900	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326428	0.92[ASN][1000 genomes]
rs2326430	0.90[ASN][1000 genomes]
rs2326433	0.88[ASN][1000 genomes]
rs2875927	0.90[ASN][1000 genomes]
rs2875932	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28885745	0.92[ASN][1000 genomes]
rs4053282	0.86[EUR][1000 genomes]
rs4086915	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4348544	0.88[ASN][1000 genomes]
rs4398969	0.87[EUR][1000 genomes]
rs4621850	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871031	0.92[ASN][1000 genomes]
rs4871032	0.90[ASN][1000 genomes]
rs4871823	0.81[EUR][1000 genomes]
rs4871824	0.86[EUR][1000 genomes]
rs6469882	0.92[ASN][1000 genomes]
rs6469888	0.92[ASN][1000 genomes]
rs6469891	0.90[ASN][1000 genomes]
rs6469893	0.86[ASN][1000 genomes]
rs7012522	0.90[ASN][1000 genomes]
rs7386139	0.92[ASN][1000 genomes]
rs7387672	0.92[ASN][1000 genomes]
rs7464941	0.88[ASN][1000 genomes]
rs7813264	0.91[ASN][1000 genomes]
rs7817075	0.91[ASN][1000 genomes]
rs7817379	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7821583	0.91[ASN][1000 genomes]
rs7821842	0.91[ASN][1000 genomes]
rs7822000	0.91[ASN][1000 genomes]
rs7824637	0.84[ASN][1000 genomes]
rs7829279	0.92[ASN][1000 genomes]
rs7832657	0.91[ASN][1000 genomes]
rs7840668	0.83[ASN][1000 genomes]
rs7845541	0.88[ASN][1000 genomes]
rs7846263	0.90[ASN][1000 genomes]
rs867709	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9297609	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120995600-121038400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:121000600-121019600	Weak transcription	Left Ventricle	heart
3	chr8:121001800-121015600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:121001800-121021200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:121003200-121015200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:121003200-121015200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:121003600-121015200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:121003800-121014800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:121003800-121015200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:121004000-121017600	Weak transcription	Right Atrium	heart
11	chr8:121004000-121048000	Weak transcription	Stomach Mucosa	stomach
12	chr8:121004600-121015200	Weak transcription	Brain Anterior Caudate	brain
13	chr8:121004600-121041400	Weak transcription	Brain Angular Gyrus	brain
14	chr8:121004800-121017400	Weak transcription	Fetal Kidney	kidney
15	chr8:121005200-121015200	Weak transcription	Spleen	Spleen
16	chr8:121005200-121045800	Weak transcription	Psoas Muscle	Psoas
17	chr8:121005600-121015600	Weak transcription	Adipose Nuclei	Adipose
18	chr8:121005800-121015000	Weak transcription	Brain Substantia Nigra	brain
19	chr8:121006400-121015200	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:121006600-121015200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:121007000-121015200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:121011000-121016200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:121011800-121021000	Weak transcription	Thymus	Thymus
24	chr8:121012000-121015000	Weak transcription	Liver	Liver
25	chr8:121012200-121015200	Weak transcription	Pancreas	Pancrea
26	chr8:121012200-121022200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr8:121012600-121015400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:121013200-121014800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:121013200-121029600	Weak transcription	Right Ventricle	heart
30	chr8:121013400-121015200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr8:121013400-121015600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:121013400-121016000	Strong transcription	Fetal Intestine Small	intestine
33	chr8:121013400-121019800	Strong transcription	Fetal Stomach	stomach
34	chr8:121013400-121020000	Strong transcription	Fetal Muscle Leg	muscle
35	chr8:121013600-121016400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:121013600-121016400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr8:121013800-121015200	Weak transcription	Lung	lung
38	chr8:121013800-121015400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:121013800-121015800	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr8:121013800-121016200	Strong transcription	Ovary	ovary
41	chr8:121013800-121018200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr8:121013800-121019000	Weak transcription	Esophagus	oesophagus
43	chr8:121013800-121020000	Strong transcription	Fetal Intestine Large	intestine
44	chr8:121013800-121024200	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr8:121014000-121014800	Weak transcription	Gastric	stomach
46	chr8:121014000-121015000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:121014000-121015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:121014200-121014800	Enhancers	A549	lung
49	chr8:121014200-121015000	Weak transcription	Colon Smooth Muscle	Colon
50	chr8:121014400-121016600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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