Variant report

Variant	rs4522365
Chromosome Location	chr15:29964742-29964743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:29961833-29965059	A549	lung:	n/a	chr15:29964134-29964141
2	FOS	chr15:29964331-29964887	MCF10A-Er-Src	breast:	n/a	chr15:29964759-29964769
3	MAX	chr15:29961801-29964819	A549	lung:	n/a	chr15:29962201-29962210

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:29962258..29965164-chr15:29975337..29978294,2	K562	blood:
2	chr15:29963308..29966325-chr15:29969891..29973216,3	K562	blood:

Variant related genes	Relation type
ENSG00000256802	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29957200-29966600	Weak transcription	Right Atrium	heart
2	chr15:29958000-29966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:29960000-29966000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:29961800-29965000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:29961800-29966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:29962000-29964800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:29962000-29965000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:29962200-29967200	Enhancers	Stomach Mucosa	stomach
9	chr15:29962400-29964800	Weak transcription	K562	blood
10	chr15:29963400-29967000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:29963600-29965600	Weak transcription	HUVEC	blood vessel
12	chr15:29963800-29965000	Enhancers	Hela-S3	cervix
13	chr15:29963800-29965200	Enhancers	Fetal Intestine Small	intestine
14	chr15:29963800-29965200	Enhancers	Osteobl	bone
15	chr15:29963800-29966200	Enhancers	NH-A	brain
16	chr15:29963800-29966600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:29963800-29966800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:29963800-29967000	Weak transcription	Brain Angular Gyrus	brain
19	chr15:29964000-29964800	Flanking Active TSS	A549	lung
20	chr15:29964000-29967000	Weak transcription	NHEK	skin
21	chr15:29964200-29964800	Enhancers	HSMM	muscle
22	chr15:29964200-29965200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:29964200-29965400	Enhancers	Liver	Liver
24	chr15:29964200-29965400	Enhancers	Fetal Intestine Large	intestine
25	chr15:29964200-29965600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:29964200-29965600	Weak transcription	HMEC	breast
27	chr15:29964200-29965600	Weak transcription	NHDF-Ad	bronchial
28	chr15:29964200-29966400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:29964200-29966400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:29964200-29966400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:29964200-29966600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:29964200-29966600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:29964200-29966600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:29964200-29966600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:29964200-29966800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:29964200-29966800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:29964200-29966800	Weak transcription	Brain Anterior Caudate	brain
38	chr15:29964200-29966800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:29964200-29966800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr15:29964200-29966800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:29964200-29967000	Weak transcription	Gastric	stomach
42	chr15:29964200-29967000	Weak transcription	Pancreas	Pancrea
43	chr15:29964200-29967000	Weak transcription	NHLF	lung
44	chr15:29964200-29967200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:29964200-29967200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:29964200-29967200	Weak transcription	HSMMtube	muscle
47	chr15:29964200-29967400	Weak transcription	Fetal Kidney	kidney
48	chr15:29964400-29964800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:29964400-29965400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:29964400-29966600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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