Variant report

Variant	rs4525954
Chromosome Location	chr4:150975539-150975540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10003178	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10004630	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10005992	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10011368	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10014266	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10018922	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10022936	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10026506	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10027662	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10031412	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11726792	1.00[ASN][1000 genomes]
rs28360726	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28374205	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28392881	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28397206	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28413051	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28416593	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28423983	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28439804	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28513621	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28559901	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28654919	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28735454	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28887006	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28896206	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4259040	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4339189	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4356899	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4423856	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4459971	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4546227	0.94[ASN][1000 genomes]
rs4631016	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60160057	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61361070	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62339860	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339861	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339874	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339875	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62339876	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339877	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339878	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339880	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339909	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62341681	0.93[EUR][1000 genomes]
rs62341684	0.94[ASN][1000 genomes]
rs7659009	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9307863	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9784426	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9968348	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9968351	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9985766	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9992748	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4525954	DCLK2	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150972200-150977200	Weak transcription	A549	lung
2	chr4:150975000-150976200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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