Variant report
| Variant | rs4527564 |
|---|---|
| Chromosome Location | chr5:27125142-27125143 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr5:27124747-27125175 | MCF-7 | breast: | n/a | n/a |
| 2 | RAD21 | chr5:27124755-27125143 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | RAD21 | chr5:27124683-27125160 | MCF-7 | breast: | n/a | n/a |
| 4 | CTCF | chr5:27124663-27125197 | A549 | lung: | n/a | chr5:27124895-27124904 |
| 5 | RAD21 | chr5:27124664-27125242 | SK-N-SH | brain: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:27124531..27126963-chr5:27223227..27225555,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CDH9 | TF binding region |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs62346460 | 1.00[ASN][1000 genomes] |
| rs62346463 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917332 | chr5:26620698-27232713 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv868856 | chr5:26789778-27321390 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv881006 | chr5:27010686-27231314 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
