Variant report

Variant	rs4529031
Chromosome Location	chr4:152220973-152220974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10006188	0.94[ASN][1000 genomes]
rs10032413	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12509608	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12643490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13134038	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13134365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1875308	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407165	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407167	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407220	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4504229	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535778	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535784	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6835206	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6845400	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6850311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7654306	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1025192	chr4:152202627-152498890	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537307	chr4:152202627-152498890	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152197800-152242400	Weak transcription	Aorta	Aorta
2	chr4:152198800-152221800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:152198800-152242800	Weak transcription	Fetal Lung	lung
4	chr4:152201600-152228600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:152203600-152243000	Weak transcription	Esophagus	oesophagus
6	chr4:152206400-152225600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:152206800-152225400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:152208400-152228400	Weak transcription	Fetal Stomach	stomach
9	chr4:152212800-152225400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:152213000-152234800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:152213400-152223200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:152213400-152224800	Weak transcription	HMEC	breast
13	chr4:152213400-152225600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:152213400-152228400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:152213400-152235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:152213600-152221800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:152216400-152223000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:152216400-152224800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:152216400-152224800	Weak transcription	Ovary	ovary
20	chr4:152216600-152224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:152216600-152224800	Weak transcription	NHEK	skin
22	chr4:152216600-152225800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:152216600-152228600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:152216800-152224600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:152217000-152228800	Weak transcription	Fetal Intestine Large	intestine
26	chr4:152217000-152233600	Weak transcription	Right Atrium	heart
27	chr4:152217000-152235800	Weak transcription	Lung	lung
28	chr4:152217600-152223400	Weak transcription	Small Intestine	intestine
29	chr4:152217600-152224800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:152217600-152228600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:152217800-152223200	Weak transcription	Fetal Intestine Small	intestine
32	chr4:152217800-152224800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:152217800-152225400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr4:152217800-152225600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:152218200-152223000	Weak transcription	Colon Smooth Muscle	Colon
36	chr4:152218600-152223400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:152218600-152225200	Weak transcription	Stomach Mucosa	stomach
38	chr4:152218600-152225600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:152218600-152232600	Weak transcription	HUVEC	blood vessel
40	chr4:152218600-152236000	Weak transcription	A549	lung
41	chr4:152218800-152223200	Weak transcription	Brain Substantia Nigra	brain
42	chr4:152218800-152224600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:152218800-152225200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:152218800-152242200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:152219000-152223200	Weak transcription	Brain Angular Gyrus	brain
46	chr4:152219000-152223200	Weak transcription	Brain Anterior Caudate	brain
47	chr4:152219000-152223200	Weak transcription	Brain Hippocampus Middle	brain
48	chr4:152219200-152222000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:152219200-152222000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:152219200-152222400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links