Variant report

Variant	rs4531365
Chromosome Location	chr10:4984333-4984334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4984238..4986431-chr10:4987413..4989346,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11252894	0.91[CHB][hapmap]
rs12411321	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs12414884	0.92[JPT][hapmap]
rs12774134	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1937881	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1937908	0.84[JPT][hapmap]
rs34072915	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34373625	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34420413	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34702521	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34716426	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34724070	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35016422	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35056421	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35231678	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35464459	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35468197	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36000835	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36096746	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268415	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4332428	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4341440	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4382804	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4397735	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4418707	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4628584	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5011018	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5011019	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56279605	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59428599	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61856089	0.82[EUR][1000 genomes]
rs66624122	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66885174	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67466576	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68005215	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71477878	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907062	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7921185	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7922153	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv894793	chr10:4935482-4988818	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv549882	chr10:4943518-5203864	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	esv2763913	chr10:4961021-5321407	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv894794	chr10:4972761-5121745	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4531365	AKR1C1	cis	Whole Blood	GTEx
rs4531365	AKR1C2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4968600-4990800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:4973000-4984800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:4973000-5005600	Weak transcription	Left Ventricle	heart
4	chr10:4973200-4994800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:4974000-4990600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:4974200-4986200	Weak transcription	Psoas Muscle	Psoas
7	chr10:4974200-4990600	Weak transcription	Esophagus	oesophagus
8	chr10:4974600-4985400	Weak transcription	Fetal Stomach	stomach
9	chr10:4977800-4988200	Weak transcription	Pancreas	Pancrea
10	chr10:4981000-4986000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:4981200-4984600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:4981400-4985600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:4981400-4985600	Enhancers	HMEC	breast
14	chr10:4981400-4987600	Enhancers	Hela-S3	cervix
15	chr10:4981600-4985400	Weak transcription	Ovary	ovary
16	chr10:4982000-4989600	Enhancers	HepG2	liver
17	chr10:4982200-4987400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:4982600-4985600	Enhancers	NHEK	skin
19	chr10:4983200-4985000	Enhancers	Aorta	Aorta
20	chr10:4983200-4986400	Enhancers	HSMMtube	muscle
21	chr10:4983200-4987000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:4983400-4985000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:4983400-4985600	Enhancers	Stomach Mucosa	stomach
24	chr10:4983400-4987200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:4983600-4984600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:4983600-4985600	Enhancers	HUVEC	blood vessel
27	chr10:4983600-4987200	Enhancers	Osteobl	bone
28	chr10:4983600-4991600	Enhancers	Adipose Nuclei	Adipose
29	chr10:4983800-4986400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:4983800-4986600	Enhancers	Liver	Liver
31	chr10:4983800-4987000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:4984000-4984400	Flanking Active TSS	K562	blood
33	chr10:4984000-4984600	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:4984000-4984800	Enhancers	Brain Substantia Nigra	brain
35	chr10:4984000-4984800	Weak transcription	Right Atrium	heart
36	chr10:4984000-4984800	Flanking Active TSS	A549	lung
37	chr10:4984000-4985000	Enhancers	Colon Smooth Muscle	Colon
38	chr10:4984000-4985600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:4984000-4986400	Enhancers	NHLF	lung
40	chr10:4984000-4987000	Enhancers	HSMM	muscle
41	chr10:4984000-4988000	Enhancers	NHDF-Ad	bronchial
42	chr10:4984000-4990400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:4984200-4984600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:4984200-4984600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:4984200-4984800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:4984200-4986200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:4984200-4987200	Weak transcription	Fetal Intestine Small	intestine
48	chr10:4984200-4989600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links