Variant report

Variant	rs4532197
Chromosome Location	chr4:30923840-30923841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10001740	0.81[AFR][1000 genomes]
rs12641355	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4386561	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4692482	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs67502847	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
3	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:30918600-30925800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:30919400-30926200	Weak transcription	Left Ventricle	heart
6	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
7	chr4:30922000-30924200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:30922000-30935800	Weak transcription	Aorta	Aorta
9	chr4:30922400-30926800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:30922400-30929400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:30922400-30929600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:30922400-30931400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:30922400-30933800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:30922600-30927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:30922600-30934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:30923400-30928200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:30923800-30930200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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