Variant report

Variant	rs453295
Chromosome Location	chr6:33501330-33501331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs169739	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs210159	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210167	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210168	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs210171	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210173	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210174	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210175	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210176	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs210193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210195	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs427624	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs435945	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33500600-33502000	Enhancers	Fetal Thymus	thymus
2	chr6:33501000-33501400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:33501000-33501400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:33501000-33501400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
5	chr6:33501000-33501600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:33501000-33501600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:33501000-33501600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr6:33501000-33501600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:33501000-33501800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr6:33501000-33501800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr6:33501000-33501800	Flanking Active TSS	Dnd41	blood
12	chr6:33501000-33501800	Enhancers	HepG2	liver
13	chr6:33501200-33501400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:33501200-33501400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:33501200-33501600	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr6:33501200-33501600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:33501200-33501600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr6:33501200-33501600	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr6:33501200-33501800	Flanking Active TSS	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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