Variant report

Variant	rs4533299
Chromosome Location	chr16:80069459-80069460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12597198	0.91[EUR][1000 genomes]
rs12597421	0.80[AFR][1000 genomes]
rs28495719	0.87[EUR][1000 genomes]
rs28499095	0.88[EUR][1000 genomes]
rs28705163	0.85[EUR][1000 genomes]
rs4077493	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078328	0.95[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs4243200	0.90[EUR][1000 genomes]
rs4362404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441292	0.85[EUR][1000 genomes]
rs4470161	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889070	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57575678	1.00[EUR][1000 genomes]
rs8053986	0.84[EUR][1000 genomes]
rs8057460	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4533299	OR14C36	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80062000-80069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:80062000-80075000	Weak transcription	NH-A	brain
3	chr16:80062800-80070200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr16:80064000-80072400	Weak transcription	Esophagus	oesophagus
5	chr16:80064400-80072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:80064600-80072200	Weak transcription	NHEK	skin
7	chr16:80064600-80073600	Weak transcription	HMEC	breast
8	chr16:80068400-80069800	Enhancers	Hela-S3	cervix
9	chr16:80068800-80070200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:80069400-80070400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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