Variant report
| Variant | rs4533772 |
|---|---|
| Chromosome Location | chr4:19494281-19494282 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11941239 | 0.86[EUR][1000 genomes] |
| rs11941258 | 0.86[EUR][1000 genomes] |
| rs12498278 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12502805 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12502837 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12505564 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12509006 | 0.86[EUR][1000 genomes] |
| rs12509257 | 0.90[EUR][1000 genomes] |
| rs12509615 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12511416 | 0.86[EUR][1000 genomes] |
| rs12511797 | 0.86[EUR][1000 genomes] |
| rs12513117 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12639939 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12640044 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12642808 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12643303 | 0.86[EUR][1000 genomes] |
| rs12644026 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2322088 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2322089 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28509177 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35611948 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs41479646 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4386602 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4449410 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs73803145 | 1.00[ASN][1000 genomes] |
| rs73803147 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv878734 | chr4:19474680-19598710 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv461286 | chr4:19488871-19709795 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv593786 | chr4:19488871-19709795 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19494200-19494400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr4:19494200-19494800 | Enhancers | Osteobl | bone |
