Variant report

Variant	rs4533917
Chromosome Location	chr5:36522098-36522099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16903086	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16903092	0.92[EUR][1000 genomes]
rs6860117	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6881155	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs753889	0.96[EUR][1000 genomes]
rs7715215	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3345119	chr5:36519395-36523593	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv3324849	chr5:36520445-36522943	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36521200-36523000	Enhancers	Esophagus	oesophagus
2	chr5:36521200-36523200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:36521200-36523600	Weak transcription	Fetal Brain Female	brain
4	chr5:36521200-36524800	Enhancers	Right Atrium	heart
5	chr5:36521400-36522200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:36521400-36523000	Enhancers	Right Ventricle	heart
7	chr5:36521400-36524200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:36521400-36525200	Enhancers	Left Ventricle	heart
9	chr5:36521600-36523000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:36521600-36523000	Enhancers	Psoas Muscle	Psoas
11	chr5:36521600-36523000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:36521600-36524400	Weak transcription	Brain Anterior Caudate	brain
13	chr5:36521800-36522200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:36521800-36522400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:36521800-36522800	Enhancers	Brain Cingulate Gyrus	brain
16	chr5:36521800-36523000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:36521800-36523000	Enhancers	Fetal Muscle Leg	muscle
18	chr5:36521800-36524600	Enhancers	Adipose Nuclei	Adipose
19	chr5:36522000-36522400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:36522000-36522400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:36522000-36522400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr5:36522000-36522600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:36522000-36522600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:36522000-36522800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:36522000-36522800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:36522000-36523000	Enhancers	NHEK	skin
27	chr5:36522000-36523200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:36522000-36523200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:36522000-36523200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr5:36522000-36523200	Enhancers	Fetal Muscle Trunk	muscle
31	chr5:36522000-36523800	Enhancers	Pancreas	Pancrea

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