Variant report

Variant	rs4535403
Chromosome Location	chr4:142813957-142813958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1020267	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1020268	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1354048	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1354049	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1500833	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1909868	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2173817	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2197183	0.81[EUR][1000 genomes]
rs2322350	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2840104	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28538357	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6537084	0.82[EUR][1000 genomes]
rs67462370	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6811406	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6826368	0.82[EUR][1000 genomes]
rs6842837	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6851467	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7677292	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894510	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs894511	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894512	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894513	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894514	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894515	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs904916	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs964404	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142813000-142814200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:142813000-142814200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:142813000-142820000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:142813600-142814400	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links