Variant report

Variant	rs4539221
Chromosome Location	chr10:55890587-55890588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55597627-55602376..10:55882057-55892580	GM12878	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10458669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733925	1.00[JPT][hapmap]
rs10763074	1.00[JPT][hapmap]
rs10763075	1.00[JPT][hapmap]
rs10763076	1.00[JPT][hapmap]
rs10825244	1.00[JPT][hapmap]
rs11004104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11527495	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764713	1.00[JPT][hapmap]
rs12781225	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16905760	1.00[JPT][hapmap]
rs4272709	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4348806	1.00[JPT][hapmap]
rs4403715	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4447073	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450095	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4495798	1.00[JPT][hapmap]
rs4509671	1.00[JPT][hapmap]
rs4636568	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4998401	1.00[JPT][hapmap]
rs7093302	1.00[JPT][hapmap]
rs7907790	1.00[JPT][hapmap]
rs7920089	1.00[JPT][hapmap]
rs9663427	1.00[JPT][hapmap]
rs9787578	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55890200-55890600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:55890200-55890600	Enhancers	Placenta Amnion	Placenta Amnion

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