Variant report

Variant	rs4540316
Chromosome Location	chr7:21951887-21951888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6958427	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6978729	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21933000-21963200	Weak transcription	A549	lung
2	chr7:21936600-21956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:21936600-21956600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:21937000-21952200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:21937000-21956400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:21937200-21956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:21937400-21956000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:21937600-21952000	Weak transcription	Psoas Muscle	Psoas
9	chr7:21937600-21952800	Strong transcription	Thymus	Thymus
10	chr7:21937600-21956200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:21937600-21956400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:21937800-21954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:21937800-21956000	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr7:21937800-21956200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:21938000-21955000	Weak transcription	Stomach Mucosa	stomach
16	chr7:21938000-21956200	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:21938800-21952200	Strong transcription	Primary B cells from cord blood	blood
19	chr7:21938800-21952200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:21938800-21953200	Strong transcription	Fetal Thymus	thymus
21	chr7:21938800-21956600	Strong transcription	Primary T cells from cord blood	blood
22	chr7:21939000-21952000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:21940200-21952200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:21942000-21955400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:21942400-21957200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:21943000-21955000	Weak transcription	Fetal Kidney	kidney
29	chr7:21943400-21952000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:21944000-21954800	Weak transcription	NH-A	brain
31	chr7:21944000-21957400	Weak transcription	Colonic Mucosa	Colon
32	chr7:21944200-21953200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:21944200-21956200	Weak transcription	Spleen	Spleen
34	chr7:21944400-21956600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:21946000-21956200	Weak transcription	Brain Substantia Nigra	brain
36	chr7:21946000-21956400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:21946200-21954600	Weak transcription	Esophagus	oesophagus
38	chr7:21946200-21955600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:21946200-21957600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:21946200-21963400	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:21946400-21953800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:21946600-21952800	Weak transcription	Pancreas	Pancrea
43	chr7:21946600-21953400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr7:21946800-21952800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:21947600-21952200	Weak transcription	HSMMtube	muscle
46	chr7:21947800-21953000	Weak transcription	NHEK	skin
47	chr7:21947800-21956000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr7:21947800-21958000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:21948000-21953600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr7:21948000-21953800	Weak transcription	Primary monocytes fromperipheralblood	blood

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