Variant report

Variant	rs454362
Chromosome Location	chr14:77686990-77686991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NGB-3	chr14:77686604-77687262	NONHSAT037966

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4390523	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs440715	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs455156	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991630	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309147	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3374587	chr14:77686224-77689072	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3384702	chr14:77686549-77688947	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77680200-77688000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:77685000-77687400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:77685000-77692800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:77685200-77690800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:77685400-77687000	Strong transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:77685400-77692600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:77685600-77687000	Enhancers	Pancreas	Pancrea
9	chr14:77685600-77688000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:77686000-77687000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:77686000-77687000	Enhancers	Brain Anterior Caudate	brain
12	chr14:77686000-77688200	Weak transcription	Fetal Brain Female	brain
13	chr14:77686200-77687000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:77686200-77687000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:77686200-77687200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:77686400-77687000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:77686400-77687000	Enhancers	Brain Substantia Nigra	brain
18	chr14:77686400-77687000	Bivalent Enhancer	Right Ventricle	heart
19	chr14:77686400-77687400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:77686400-77712400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:77686600-77687000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:77686600-77687000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr14:77686600-77687000	Enhancers	Brain Angular Gyrus	brain
24	chr14:77686600-77687200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr14:77686600-77688800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:77686600-77689600	Weak transcription	Fetal Brain Male	brain
27	chr14:77686600-77690200	Weak transcription	Spleen	Spleen
28	chr14:77686600-77691800	Weak transcription	Fetal Intestine Small	intestine
29	chr14:77686800-77687000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:77686800-77687000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:77686800-77687000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:77686800-77687200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr14:77686800-77687200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:77686800-77687200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links